>gi|14627123|emb|AJ306320.1| Sus scrofa genomic sequence, clone PigEBAC 140E21
CCACTCAGTGGGTTAAGTATCCGGCATTGCCGTGAGCTGTGGTGTAGATTGCAGACCCAGATTGGGTCCC
GAGTTGCTGTGGCTGTGGTGTAGGCTGGAAGCTGCAGCTCTGATGTGACTCCTAACTTGGGAACTTCCAT
GTGTCGTGGGTACAGCCCTAAAAAGCAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAATTGAAAACAAG
AACTGAAACAGATACTTGTACGCCAGGATGTACATCAGCATTATTCATAATAGCCAAAAGGTGAAAACAA
CCCAAATGTCCATTTACTGATGGGCAGATAAACAAAATGTGGTATAGCCACACAATGGAACATTATT

>gi|11935067|gb|AF304158.1|AF304158 Sus scrofa MLT2CB repetitive sequence
GGATGGGCACCCGGTGGCCTCGTCAAGTCAACACATAAAATTTACCAGCATGTTCCCTAACCAATGATAC
TGACATTAAGGAAGATAACTGGAGATACTCGCCACATATACCCCATTGCTCTCTGAGAGGCAGAATAACT
GGTTGCGTCATTATATTTGTAAGTCTAGAGCTTGCCTGGTCATAGGTTTTTGCCC

>gi|11935066|gb|AF304157.1|AF304157 Sus scrofa SINE repetitive sequence
GGACCAGGGTCTGAACCAGTGCCCAAGCAGCTACCCAAGCTGCTGCAGTGACAACACTGGATCCTTTACC
TGCTGTGCCAGAAGAGAACTCCATTTGGAAACCTTTTTTGAATTTCATATATATCCCAACAGCCTACATG
ATATTTCTGCACAGATGTCCAATAAGCATCCTTTGGGAAACTTAACACAGTCAACATGAACTCTCCATTG
TCCTCCC

>gi|11935065|gb|AF304156.1|AF304156 Sus scrofa MIF repetitive sequence
CATCTCCAAGACCTTCTGTGTTAATTATCTTTTGCTGTGTACCCTAAACGACAGAGATTTAAAACAACAA
ACATTCATTACCTTACTGTTTGTGTGAATCGGGACTCCAGACGCGTTTTAGCTAGGTGGCTTTGGCTGAC
CGGAT

>gi|11935064|gb|AF304155.1|AF304155 Sus scrofa MLT1A2 repetitive sequence
GAAGGCAGCCATTGGCAAGCCAACAAAGTGGTCTCTTAGAGAACCTCACCCATTCCTGACCCCTATTTTA
GCTTAAGCCTCTAGAATT

>gi|11935063|gb|AF304154.1|AF304154 Sus scrofa L2 repetitive sequence
AGCTTCTTGAAGAACGTGACTTGGGAGAGTGAGGAAGGAGGCGGCATGGGGTTTCTGTGGAGCTTGTGGG
GTGCAATGGGGTGAGGGTTTGAACATTCTGCTAGTTCCAAGGGCTTTCTCATCAGCCTGGCCCAGGTGGA
GGACCCCTTATCGGATCCC

>gi|11935062|gb|AF304153.1|AF304153 Sus scrofa MLTC repetitive sequence
TCTTGCTTCTTTGTCTATCTCTGTGTGCTTCCTCCTACAAGAATAGGAGAGGAATGTCAAGGTGAAATCA
CATCCGTTGGTTGGTTTCATCCTGATGTTCGTACCTAATGACATCTGCAAAGACCCTCT

>gi|11935061|gb|AF304152.1|AF304152 Sus scrofa MIR2 repetitive sequence
TTAAGGAGATGTCAGCTGTGGAGATCCCGCTTCTTGATTCACTGAGCTTTACTCCCTCCTGCTTCACACA
TACCTCCTGGACCAGGAGCTCCACATTCATCAAACACTATTTTGCTCATAAGTTTATCTCATGCCTTTGG
GGAGCCTGGTCTTATATATGCATCTCGTGTAC

>gi|11935060|gb|AF304151.1|AF304151 Sus scrofa L2 repetitive sequence
CAGAAGGTGTTGGAGATGGCACTGTCTGGGGGTTATGGCGACGGCCATGGGGAGAACAGTGTGGGGGTTG
GGTCGTGACATTCAGGTTGAGAATCGTAACGATGTTTGTGAATTAGTGTTTGATGGAGACAGTGATGGCA
TCTGATAGAGCCTCCTTGCAGGAAGCCGAGAAACCAGACCGTG

>gi|5541930|emb|Y19165.1| Sus scrofa hypervariable VNTR locus, (894 bp)
CTGGGGTCGCTGTGAGTGGTCTCTGGCTGGGCAAGCTCAGGGAGCTCTTTCACTCTCGCTGATTTTTGGT
TTCTTTGTCTCTAGAATGTAGTAATGTGAGCGCCTGCCTCCCAGGGGTGGGAAGGCTTTAGTGGGTGGGG
TGATGGTGTACCTGGTCATTGCCTGCACACCAGGAGCCCGCATGACGTGGGAGCCCTGTGCAGCTTCTAC
ACTTCCATAGAGATTTTGTTTGTCCACCCACCCATCCATCCACCCACCTGGCGCTAACTATGGCATCCAT
CCATCCTCCCATCAATCCACCATCCATCATCCATCCTCCATCCACCATCCATCCTCCATCCACCATCCAT
CCATCCATCCATCATCCATCATCCTCCATCCATCCATCCATCCATCCTCCATCCATCCATTCATCCATCC
ATCCATTCATCCATCATCCATCCACCATCCATCCTCCATCCTCCATCCATCATCCATCCATCATCCATCA
TCCTCCATCCATCCATCCACCATCCATCATCCATCCTCCATCCACCATCCATCCTCCATCCACCATCCAT
CCTCCATCCACCATCCATCATCCATCCACCATCCATCCTCCATCCATCCATCCATCCATCCATCCATCAT
CCATCATCCTCCATCCATCCATCCATCCATCCTCCATCCATCCATTCATCCATCATCCATCCACCATCCA
TCATCCATCATCCTCCATCCATCCATCCATCCATCCTCCATCCATCCATTCATCCATCATCCATCCACCA
TCCATCATCCATCATCCTCCATCCATCCATCCATCCATCATCCATCCTCCATCCATCCATCCATCCTCCA
TCCATCCATCATCCATCCATCCATCATCCATCCATCATCCATCCATCATGCATC

>gi|5541929|emb|Y19164.1| Sus scrofa hypervariable VNTR locus, (873 bp)
GATCCCCCTGNGGTCTAGAAGGTCAGCCCTATGGACACCGTGGGTGGGTGCAGGTGGCCCTGGCGCAAGG
GTCCAACCCTCACAACCCTATTGGCCCCGGGGCAGAGTCTCGGANNGGGCGCCGAGCAGTGCCATCGGGC
TGTCACGGTGGGGTGGCACGGAGCGGGCAGGTGGGATGGAGCCTGCAGGAGGTGGTGGGGAGGGCTCGGC
ACCCCCATGGACCCTGGTCGGGCTCCTGCGTGGCTTCTCAGCCGCCAGCACCGTCACGGTGAGTCACGTC
ATGCAGTGAGTCAGTGGAAGCACCTGCCCAGGGCTGCCCACACCTGTCCCTCCATCCATCCATCACTTTA
ACTCTCTTGGATGCAGAAGGAAGACCCCCACCGTGGAGCTTCCCTCTCTGTGCAGCGGGAGCCCTGTTCC
TGCCCCACTGGACTCTCATGCCCTCAGTGGGGGCGAGTTGAGGAAACTGTCCAGCGGCTCTCTGTGACAC
AGTGTGACGCCCAAGGGCCACCAGGACACCACTCTGTCCAGCCACAGCCCAGGCTGCTGAAGGGCTGACG
GCTCACCCTGAGCCGGGCGGGGCACAGACCCCCACGCGGGCACCCCCCACCCCGCCAGGCCCCACACCCA
GCAGTGTTTACCTGGACAAAACACTGTTCCAAGGGTTACATGAATGGCAACCTTGACCACAGGGAGGGAG
GAGGCCAGAGACGTCACGAAACGCAGCCTAAAATGACTGTTTCACTGTGGTCTGTCCACAAACCCTGACT
CATCAGGAAGTGGAGGGAGGAGGGGAAGGGAGATGGGGGGAGGGGTCTCCAAAGGAACAAGGACCTACAC
AGGTGGACCCTTCACAGACCCTGGGCCCAAGCT

>gi|1976|emb|X15410.1| Pig hox2.4 gene 3'end and L1Ss repeat 5'end
AATTGTTAAAAGTGTTCTTAGGTTTATTGTGAAGCGAATGTATCCTGTATCTGTGAATTGCTTTATTGCG
GGGAAGGGGGGCTAATTACATATTTTGTTGTTCCTGTATACTTTGTTGTCTGTGCCCGAAAAGNGGAAGA
GTTACAATAAAGTTTACAAGCGAGAACCCCCCCAAAAAAAATAATAATTACCTTAAATGTCAGTGGACTG
AATGCTCCAAACAAAAGACAAAGTGTGGCATTAGAGACCCACCTTAAGGCAAAGAGGCATAAATTGAAAG
TAAGGGGGTGGAAAAGACATTCATGAGAATGTAAATGATACAAAAGCAGGAGTCACAGTACTCATATAAG
GCCAAGTAGGCTAAAACAAAGGGCGTAAAGAAAGAATGACACTATTAATGATAAAAGGATCAATTCAAGA
TGAGGATATTACATTTGTGAATATATATGTCCCTAATATGTGAGCACCCAAATACAAACAACTAATATAT
TCATAGATATAAAAGAGAATTTGATGGGAACAAAATAATAGGATACTTTAACACTCCACTCACATCAATG
AACAGATCCTCTAGA

>gi|2190956|gb|AF002659.1|AF002659 Sus scrofa Y chromosome repetitive sequence
AAGCCAGAGATGATTTATTTCTACCCAGACGGAAGGGTTCACAAGGCACTGGGCAGGGGCAGTTTAAGTT
GGGGAAGAAAAACTGAAAATGGGAGACCAAGCCCCACCCATGTGAAACACAAGCGAAATCTTGAAGATCA
AGACAGCAGAAGAGAGATCGTAGTACCTTAAGCTGGGGGGAGGTTGGTACAGGCTTCATTTGCACAAAGT
TAGGAGAAGGTGTCCCCTTTTGAAATGCCATGAAAACAGCACAAGACTCCACTGTGCACCAAGGTTTCCC
AAAATGAGATTCTGGAAACCTAACAGAATTCAATCCCCAAATTACCTCGCACAATTTTTTAACACAACTG
CCCTAAAATACTCACTGAGCTAATGGAGGACACAGGTTGACAGTGAAATCAAACCAGGGCAGTGGTGCAA
ATACCAAATGAGAATATTAACAAAGTCCTAAAAAATCCCCAGAACCTAAAAAATATAACTTAATTGATAA
ATTGACCAGAAGGGTCCACTGCATTTTTGATCAGGTTGAAAAATGAATTAACTTTAAACAGCTCATTTGA
ANTTTTTAAAATCCGAAGTGCCAAGCCAAAAACCATTGAAGAAATTGAAA

>gi|2106|emb|X12696.1| Pig DNA for male-specific repeat 1
GAATTCTCATTAGGTCCCTTATGTGTAGGTGGTGGAAAAGATGTTGATCTCGGAGTCAAATGTGTGATCA
TGTAGAACGCAGTGGCAATGGGATGGTTATCTGTCAGTGTGAAGGGCTGAGAATGGTAAGGTATGGGTGC
ACGGTGTAAGGTGAAATATCTCCATACAAGAAGCGGAGTTACTTCCTGCGCAAAGAATTTGTAGTTGATA
GGAGTTTGGAAGACTGATGGAGAATCTCGGTTAAAGAATTTGACTGCTCTCCTGGCTGAGATTTGCCAAC
CTGGACCAGCACAGATAACCTTGGCTGAGGAGGATTCGAGAGAATGTGAAGGAGGAAGAAGCCGAGAGAG
AGAGAGAGATGAAATTTGGATACAAGCCACATTCCAGGGCACAGTTTCATTCCCAAGCCCTTGTCTGTGT
TTCCGGGGACTATTAGACACGAAGGCTGTATCAGGACTCTTGCATGAGATTTTCACTCGTTCTTGGCCTT
TCTCTAGAAGTACGTCGATTGCCAGCAGTCCGTGCTTGGCACCCATGTCTTCTCAAAGTACACGAGGTGT
GGGTCAGTTAAATGACACCCTATATTTTCCCTAAGCGGCAAAGACACTGCCTATTGAAATGGCAGCTCAT
AGGGTGTCCTTCCTCAGTCGTTCCTTGATTTCATTGTCCAGGGGCCTTTAGTTTGGGTGTTTGGAATGAT
ATCTTTTCTCTCCAAAAGAGATTCTATACTGTGTATTCGTGTGAAGCAGTGACTGAGAAAGCACTTGACC
CTGAAGTGCTGCACATGTTATCAGATATCCATCATGATAGAGAAAATTGGGCTCCCCAGTGTGTGGAGTT
GCCTTCCTTCGGAAAGGTGCAGTCCCAGAGGTGGCCATGGTTCTGATATCATGCCCATGGAGCCTTGTGC
CCAAACAACCTCTCTGTGAGAAAAGAGGTGTGTGATGGGCCATATGTGGGAAAGTCTCACCCTCAAACCT
TGAGAGTTAAAGGATGGACACCCTGAGCTCTTGCTCTGGAGGTCTGTCGAAGTTGATGGAAAGGAGGATC
CATCAGATGGGTGGTCCTTTTGGATGAACACTATTATCGCCATCTGTAGACTCATAGCCACCACTCTCAT
CAGGCTCCCAAGCTCAATGTGGATTCTAGAGGCTTGGTGTTTGAACATGTGATATCTTCAGGGGATCCGT
GGGCAGAATACCTCACGGGAGTTCCTCCATGTGAAAAAAGAGTTGTGCTTCAGGGCCATTTGAAACAATA
CCTCCCGCGGCACAAAGAAGGAATCCATGCCCGAATGCTCTCCACCAAGCGTGAGGCCCTGGATGTAACC
CCTCAAAGAGACTTTCCCAATGGGGCATTTTCAGCTCCACACTTCTGAATCCATATTTCCATAGCCTAAG
CCACAGGGGAGCCCTCCAAACAGAGGCCTTTAAACCAAGATGTATCCGGTCTATTTCAGGTGCCTTTTCC
ACAGGTGGATAAGAACAAGCCCTCCCACTCATTGAGTGACTTACTGGGAGTGTGGTGCCTGGGGCCAGGG
CCAGTGTGTTTGTTCTATCTACAGTCATAAGGAAGGAAGCTGGGACGATGATCTGATCTTCCAGGAGCGC
TGTGATGATGCCTGCAATGTGAGGGTATTGAAAGTTCCCTCCTGGAAGGGAGTGGGCTCTGTCCCTGACA
CTCCTGAGGCTAGAGAATGAGGAGGTCTAATCCATAGAGACTGGTTTTTGTTGACAGACATCTTGCACTC
TGGGCTCTTGTTGGCCAGCCCACTCGCCAAGGATGCTCAGACCATTGTTTGGATGCCCAGTCATTGAGAC
ATGAAGAGTCCTAGACATCATATTCTATATCCCCTAAGAACGAGTCCAGAGATCCTCACATGAGCAAATC
CACCATACCTCATGGACCAGGTAGGGAATGCTGCAGATCAGCACTTTCTTGGGAGAGCACTCATGGGAAC
GTTGTTTCAAGTGCGTTGCACTCTGCGTCCAATATGGGACCCTCGAGACCGAAGTACATATGAAGTGGTC
AGCGTGTCCATAGGAAGGGATGACTATGGGAAGTATGGTTTAAGGCTGACCTAGTTGGGGTGTCTCCACA
CAGCACAGGAAGTCTTTCAGGACCACGGAATTTATATGCGATCAGACCTAGGATGACAGGGAGAAAAGGC
TGGGGGATAACTTGGACGATTCTCTTGGCAAATATATTTGATCCATTATTACCCCAGGTCGAATTGTAGC
AGGAGGATACAGGAGAAATTGAAGGGGGGCAAAGGGGAGAGTGAGAGAGCTAGAGAGAAGGAGATGAAAA
GAAGGCGAGAGAGAGGTAAAGGAGCTGTTGTTTCAAGCAACTGTCAATGGCAGGATAATTTCTCCAAGGA
CGTGTCTTTCTTTAAGGTGGCTAGCACACAAATGGGACAAACCAGCACACTTGTCCCAGAGTCTTCTCTC
CTTCAAGGCCTGACGCCCACATTGTGTCTATTACAATCCCTGCTCCATCCTGGAAGACAGGTTTGAAAGC
CTTGCTGTGGTCCCTCTATCTTCTCCAATGGCATGGGGTGGAAATCAGAGTAAGAGATATTCCATAGTTT
CCTTCAGGGGAAAAGCCTCCTCCCATGGAAAGAGATGCTCGTGTGTTGTTCTTCCTCCATCGGCCATTGT
TTTCCTGTTCAGGCTCCGTGGGGAGTGGGTCTTTTTCAATGCCATATTTTCTTTCCTAATGAGGTTGTAG
ACTGTGTATTCCTGGGAAGCAGTTTTGGAACCACCGTGTTGAGCCTGACACACGTTCAGGGGAAGAGGCA
TCCTTCTGTAGAGAGCAGGTGGGCACAGAGGAGGTGGAGTTGCCTTCCATCTAGAAGTTCAGGCCCAATG
GTTGCCATGGCAAGGGCATGTTGCGCACCAAGTATTGTGACACAACACACCGTATGTGAGAAGAGAGGCG
AGGGATGGGCCCAAAGTGGGAAGCTCTCACCGTCACCCCCAATTGGTTGTACCTCGGGCAGCCTGATCTC
ATGATCTGGAGGTATGTTGATACTAAATGAAACGAGGATCCATTGGATGTATTGGACAATTGGATGATAA
GTAGTATTTCCAGCATTCTTCTCATGGCCACCATTCTCATCAGGCTGCTGAGGAAATAGGCACTGCTCAG
GCTTGCTTTTGGATGATGATCCATTTGAAAGGGACCAGTGAGCCTATCCCTTCCAGTCTTTTCCAACAGG
GAAAAAAAGACTCCTAAGTATGACCGGGATGAGAAATCTCATTCCAGATCTCAAAGCCTGAAAATTGGCC
ACTCAGCCTTCCAAAAAAGACGAGGCCCTCAACATCAACCCTTACGAAATACTGGAATGGGGGCAAGGAC
CATTCCTTGCTTCGGAACGTACACGTCCATAGATGAAATCACAAACTAGCTCTCCACAGTAACAAATTTC
CCAAGAATGAAGCTGGGATATGTCTGGTGGGTATTTCACAGGTTGATAAGAATAAGTCCTGTCTAAAGGG
GTGCTGGATGGAAGTGGGGTGACTAGTTCCACTGCTGGCTGTTTGTGGGGTACACAGTTGTCAGGAATTT
AAGGAGTCTCTCTTGTTATCTTCCGTGAGCCCTGTGGTGAGGGCTCCCCTTGGGCAGGACTTGAGGTTTC
GCTCTTGGACGAGAGGGGCCTCTGGCCTGCCAATGGAGGGTCTAGAGAAGGAGGAGGATTGTCCCAAATG
GAGACTGGTTTGAGGGGACCGAATCCTGGAACTCTGTCCCATTGTCATTCAGACCCTGCTGAAGGGTGCT
CAGACCCCTTCTTAGATGCCAAATCACTGAGACATGGAGAGGCAGAGAATTC

>gi|2088|emb|Y00104.1| Sus scrofa repetitive dna sequence element PRE-1
AGGGAGTTCCCATCGTGGCTCAGTGGTAACGAACCTGACTAGTATCCATGAGGATGCAGATTCAATCCCT
GGCCTTNCTCAGTGGGTTAAGGATCCNGCATTGCTGTGAGNTGTGGTGTAGGTCNCAGATGCGGCTCGGA
TCCCGTGTTGCTGTGGCTGTGGTGTAGGCCGGCAGCTACAGCTCCGATTNGACCCCTAGCCTGGGAACCT
CCATATGCCGCGGGTGNGGCCCT

>gi|2008|emb|X15411.1| Pig part of truncated L1 repeat sequence L1Ss
AATCAATCAATGGAAAAATGGGCAAAAGACCTGAATAGACATTTCTCCAAGGAAGATACACAGATGGCCA
ANAAACACATGAAAAAATGCTCAACATCGCTGATTATAAGAGAAATGCAAATCAAAACTACCATGAGATA
CCACCTCACACCAGTCAGAATGGCCATCATTAATAAATCCACAAATAACAAGTGCTGGAGTGGCTGTGGA
GAAAAGGAAACCCTCCTGCACTGCTGGTGGGAATGTAAACTGGTACAACCACTATGGAGACAGTTTGGAG
ATACCTTAGAAATCATATCATAGATCTTCCATATGACCCCACAATCCCACTCTTGGGCATCTATCCGGAC
AACAAAACTCTACTTAAAAGAGACACATGCACCCGCATGTTCATTGCAGNACTATTCACAATAGCCAGGA
CATGGAAACAATCCAAATGTCCATCGACAGATGATTGGATTCGNNAGAGGTGGTATATATACACAATGGA
ATACTCCTCAGCCATAAAAAAGAATGACATAATGCCATTTACAGCAA